Source code for

#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
# Laurent El Shafey <>
# Roy Wallace <>
# isort: skip_file

from .resources import *  # noqa: F401,F403
from .io import *  # noqa: F401,F403
import inspect
import numpy

[docs]def score_fusion_strategy(strategy_name="average"): """Returns a function to compute a fusion strategy between different scores. Different strategies are employed: * ``'average'`` : The averaged score is computed using the :py:func:`numpy.average` function. * ``'min'`` : The minimum score is computed using the :py:func:`min` function. * ``'max'`` : The maximum score is computed using the :py:func:`max` function. * ``'median'`` : The median score is computed using the :py:func:`numpy.median` function. * ``None`` is also accepted, in which case ``None`` is returned. """ try: return { "average": numpy.average, "min": min, "max": max, "median": numpy.median, None: None, }[strategy_name] except KeyError: # warn("score fusion strategy '%s' is unknown" % strategy_name) return None
[docs]def selected_indices(total_number_of_indices, desired_number_of_indices=None): """Returns a list of indices that will contain exactly the number of desired indices (or the number of total items in the list, if this is smaller). These indices are selected such that they are evenly spread over the whole sequence.""" if ( desired_number_of_indices is None or desired_number_of_indices >= total_number_of_indices or desired_number_of_indices < 0 ): return range(total_number_of_indices) increase = float(total_number_of_indices) / float(desired_number_of_indices) # generate a regular quasi-random index list return [int((i + 0.5) * increase) for i in range(desired_number_of_indices)]
[docs]def selected_elements(list_of_elements, desired_number_of_elements=None): """Returns a list of elements that are sub-selected from the given list (or the list itself, if its length is smaller). These elements are selected such that they are evenly spread over the whole list.""" total_number_of_elements = len(list_of_elements) if ( desired_number_of_elements is None or desired_number_of_elements >= total_number_of_elements or desired_number_of_elements < 0 ): return list_of_elements # sub-select return [ list_of_elements[i] for i in selected_indices( total_number_of_elements, desired_number_of_elements ) ]
[docs]def pretty_print(obj, kwargs): """Returns a pretty-print of the parameters to the constructor of a class, which should be able to copy-paste on the command line to create the object (with few exceptions).""" return "%s(%s)" % ( str(obj.__class__), ", ".join( [ "%s='%s'" % (key, value) if isinstance(value, str) else "%s=%s" % (key, value) for key, value in kwargs.items() if value is not None ] ), )
[docs]def is_argument_available(argument, method): """ Check if an argument (or keyword argument) is available in a method Attributes ---------- argument: str The name of the argument (or keyword argument). method: Pointer to the method """ return argument in inspect.signature(method).parameters.keys()