Preset Configurations

Preset configurations for baseline systems

This module contains preset configurations for baseline FCN architectures and datasets.

Models

deepdraw.configs.models.driu	DRIU Network for Vessel Segmentation.
deepdraw.configs.models.driu_bn	DRIU Network for Vessel Segmentation with Batch Normalization.
deepdraw.configs.models.driu_od	DRIU Network for Optic Disc Segmentation.
deepdraw.configs.models.hed	HED Network for image segmentation.
deepdraw.configs.models.m2unet	MobileNetV2 U-Net model for image segmentation.
deepdraw.configs.models.resunet	Residual U-Net for image segmentation.
deepdraw.configs.models.unet	U-Net for image segmentation.
deepdraw.configs.models.lwnet	Little W-Net for image segmentation.

Datasets

Datasets include iterative accessors to raw data (Supported Datasets) including data pre-processing and augmentation, if applicable. Use these datasets for training and evaluating your models.

deepdraw.configs.datasets.__init__	Standard configurations for dataset setup.
deepdraw.configs.datasets.csv	Example CSV-based custom filelist dataset.
deepdraw.configs.datasets.chasedb1.first_annotator	CHASE-DB1 dataset for Vessel Segmentation (first-annotator protocol)
deepdraw.configs.datasets.chasedb1.first_annotator_768	CHASE-DB1 dataset for Vessel Segmentation.
deepdraw.configs.datasets.chasedb1.first_annotator_1024	CHASE-DB1 dataset for Vessel Segmentation.
deepdraw.configs.datasets.chasedb1.second_annotator	CHASE-DB1 dataset for Vessel Segmentation (second-annotator protocol)
deepdraw.configs.datasets.chasedb1.xtest	CHASE-DB1 cross-evaluation dataset.
deepdraw.configs.datasets.chasedb1.mtest	CHASE-DB1 cross-evaluation dataset with matched resolution.
deepdraw.configs.datasets.chasedb1.covd	COVD-CHASEDB1 for Vessel Segmentation.
deepdraw.configs.datasets.drive.default	DRIVE dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.drive.default_768	DRIVE dataset for Vessel Segmentation (Resolution used for MTL models)
deepdraw.configs.datasets.drive.default_1024	DRIVE dataset for Vessel Segmentation (Resolution used for MTL models)
deepdraw.configs.datasets.drive.second_annotator	DRIVE dataset for Vessel Segmentation (second annotation: test only)
deepdraw.configs.datasets.drive.xtest	DRIVE cross-evaluation dataset.
deepdraw.configs.datasets.drive.mtest	DRIVE cross-evaluation dataset with matched resolution.
deepdraw.configs.datasets.drive.covd	COVD-DRIVE for Vessel Segmentation.
deepdraw.configs.datasets.hrf.default	HRF dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.hrf.default_768	HRF dataset for Vessel Segmentation.
deepdraw.configs.datasets.hrf.default_1024	HRF dataset for Vessel Segmentation.
deepdraw.configs.datasets.hrf.xtest	HRF cross-evaluation dataset.
deepdraw.configs.datasets.hrf.mtest	HRF cross-evaluation dataset with matched resolution.
deepdraw.configs.datasets.hrf.default_fullres	HRF dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.hrf.covd	COVD-HRF for Vessel Segmentation.
deepdraw.configs.datasets.iostar.vessel	IOSTAR dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.iostar.vessel_768	IOSTAR dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.iostar.vessel_xtest	IOSTAR vessel cross-evaluation dataset.
deepdraw.configs.datasets.iostar.vessel_mtest	IOSTAR vessel cross-evaluation dataset with matched resolution.
deepdraw.configs.datasets.iostar.optic_disc	IOSTAR dataset for Optic Disc Segmentation (default protocol)
deepdraw.configs.datasets.iostar.optic_disc_768	IOSTAR dataset for Optic Disc Segmentation.
deepdraw.configs.datasets.iostar.optic_disc_512	IOSTAR dataset for Optic Disc Segmentation.
deepdraw.configs.datasets.iostar.covd	COVD-IOSTAR for Vessel Segmentation.
deepdraw.configs.datasets.stare.ah	STARE dataset for Vessel Segmentation (annotator AH)
deepdraw.configs.datasets.stare.ah_768	STARE dataset for Vessel Segmentation (annotator AH)
deepdraw.configs.datasets.stare.ah_1024	STARE dataset for Vessel Segmentation (annotator AH)
deepdraw.configs.datasets.stare.vk	STARE dataset for Vessel Segmentation (annotator VK)
deepdraw.configs.datasets.stare.xtest	STARE cross-evaluation dataset.
deepdraw.configs.datasets.stare.mtest	STARE cross-evaluation dataset with matched resolution.
deepdraw.configs.datasets.stare.covd	COVD-STARE for Vessel Segmentation.
deepdraw.configs.datasets.refuge.cup	REFUGE dataset for Optic Cup Segmentation (default protocol)
deepdraw.configs.datasets.refuge.disc	REFUGE dataset for Optic Disc Segmentation (default protocol)
deepdraw.configs.datasets.refuge.cup_512	REFUGE dataset for Optic Cup Segmentation.
deepdraw.configs.datasets.refuge.cup_768	REFUGE dataset for Optic Cup Segmentation.
deepdraw.configs.datasets.refuge.disc_512	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by all annotators)
deepdraw.configs.datasets.refuge.disc_768	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by all annotators)
deepdraw.configs.datasets.rimoner3.cup_exp1	RIM-ONE r3 for Optic Cup Segmentation (expert #1 annotations)
deepdraw.configs.datasets.rimoner3.cup_exp2	RIM-ONE r3 for Optic Cup Segmentation (expert #2 annotations)
deepdraw.configs.datasets.rimoner3.disc_exp1	RIM-ONE r3 for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.rimoner3.disc_exp2	RIM-ONE r3 for Optic Disc Segmentation (expert #2 annotations)
deepdraw.configs.datasets.rimoner3.cup_exp1_512	RIM-ONE r3 for Optic Cup Segmentation (expert #1 annotations)
deepdraw.configs.datasets.rimoner3.disc_exp1_512	RIM-ONE r3 for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.rimoner3.cup_exp1_768	RIM-ONE r3 for Optic Cup Segmentation (expert #1 annotations)
deepdraw.configs.datasets.rimoner3.disc_exp1_768	RIM-ONE r3 for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.drishtigs1.cup_all	DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.cup_all_512	DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.cup_all_768	DRISHTI-GS1 dataset for Cup Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.cup_any	DRISHTI-GS1 dataset for Cup Segmentation (agreed by any annotator)
deepdraw.configs.datasets.drishtigs1.disc_all	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.disc_all_512	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.disc_all_768	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by all annotators)
deepdraw.configs.datasets.drishtigs1.disc_any	DRISHTI-GS1 dataset for Optic Disc Segmentation (agreed by any annotator)
deepdraw.configs.datasets.drionsdb.expert1	DRIONS-DB for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.drionsdb.expert2	DRIONS-DB for Optic Disc Segmentation (expert #2 annotations)
deepdraw.configs.datasets.drionsdb.expert1_512	DRIONS-DB for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.drionsdb.expert2_512	DRIONS-DB for Optic Disc Segmentation (expert #2 annotations)
deepdraw.configs.datasets.drionsdb.expert1_768	DRIONS-DB for Optic Disc Segmentation (expert #1 annotations)
deepdraw.configs.datasets.drionsdb.expert2_768	DRIONS-DB for Optic Disc Segmentation (expert #2 annotations)
deepdraw.configs.datasets.drhagis.default	DRHAGIS dataset for Vessel Segmentation (default protocol)
deepdraw.configs.datasets.montgomery.default	Montgomery County dataset for Lung Segmentation (default protocol)
deepdraw.configs.datasets.montgomery.xtest	Montgomery County cross-evaluation dataset.
deepdraw.configs.datasets.jsrt.default	Japanese Society of Radiological Technology dataset for Lung Segmentation (default protocol)
deepdraw.configs.datasets.jsrt.xtest	JSRT CXR cross-evaluation dataset.
deepdraw.configs.datasets.shenzhen.default	Shenzhen dataset for Lung Segmentation (default protocol)
deepdraw.configs.datasets.shenzhen.default_256	Shenzhen dataset for Lung Segmentation (default protocol)
deepdraw.configs.datasets.shenzhen.xtest	Shenzhen cross-evaluation dataset.
deepdraw.configs.datasets.cxr8.default	CXR8 Dataset (default protocol)
deepdraw.configs.datasets.cxr8.xtest	CXR8 cross-evaluation dataset.