.. -*- coding: utf-8 -*- ===================================== Application Program Interface (API) ===================================== .. To update these lists, run the following command on the root of the package: .. find bob -name '*.py' | sed -e 's#/#.#g;s#.py$##g;s#.__init__##g' | sort .. You may apply further filtering to update only one of the subsections below Data Manipulation ----------------- .. autosummary:: :toctree: api/data bob.med.tb.data.dataset bob.med.tb.data.loader bob.med.tb.data.sample bob.med.tb.data.utils bob.med.tb.data.transforms Datasets -------- .. autosummary:: :toctree: api/dataset bob.med.tb.data.montgomery bob.med.tb.data.montgomery_RS bob.med.tb.data.shenzhen bob.med.tb.data.shenzhen_RS bob.med.tb.data.indian bob.med.tb.data.indian_RS bob.med.tb.data.nih_cxr14_re bob.med.tb.data.padchest bob.med.tb.data.padchest_RS bob.med.tb.data.hivtb bob.med.tb.data.hivtb_RS bob.med.tb.data.tbpoc bob.med.tb.data.tbpoc_RS Engines ------- .. autosummary:: :toctree: api/engine bob.med.tb.engine bob.med.tb.engine.trainer bob.med.tb.engine.predictor bob.med.tb.engine.evaluator Neural Network Models --------------------- .. autosummary:: :toctree: api/models bob.med.tb.models bob.med.tb.models.normalizer bob.med.tb.models.alexnet bob.med.tb.models.densenet bob.med.tb.models.densenet_rs bob.med.tb.models.pasa bob.med.tb.models.signs_to_tb bob.med.tb.models.logistic_regression Toolbox ------- .. autosummary:: :toctree: api/utils bob.med.tb.utils bob.med.tb.utils.checkpointer bob.med.tb.utils.grad_cams bob.med.tb.utils.measure bob.med.tb.utils.resources bob.med.tb.utils.summary .. _bob.med.tb.configs: Preset Configurations --------------------- Preset configurations for baseline systems This module contains preset configurations for baseline FCN architectures and datasets. Models ====== .. autosummary:: :toctree: api/configs/models :template: config.rst bob.med.tb.configs.models.pasa bob.med.tb.configs.models.alexnet bob.med.tb.configs.models.alexnet_pretrained bob.med.tb.configs.models.densenet bob.med.tb.configs.models.densenet_pretrained bob.med.tb.configs.models.signs_to_tb bob.med.tb.configs.models.logistic_regression bob.med.tb.configs.models_datasets.densenet_rs .. _bob.med.tb.configs.datasets: Datasets ======== .. automodule:: bob.med.tb.configs.datasets .. autosummary:: :toctree: api/configs/datasets :template: config.rst bob.med.tb.configs.datasets.hivtb.fold_0 bob.med.tb.configs.datasets.hivtb.fold_0_rgb bob.med.tb.configs.datasets.hivtb.fold_1 bob.med.tb.configs.datasets.hivtb.fold_1_rgb bob.med.tb.configs.datasets.hivtb.fold_2 bob.med.tb.configs.datasets.hivtb.fold_2_rgb bob.med.tb.configs.datasets.hivtb.fold_3 bob.med.tb.configs.datasets.hivtb.fold_3_rgb bob.med.tb.configs.datasets.hivtb.fold_4 bob.med.tb.configs.datasets.hivtb.fold_4_rgb bob.med.tb.configs.datasets.hivtb.fold_5 bob.med.tb.configs.datasets.hivtb.fold_5_rgb bob.med.tb.configs.datasets.hivtb.fold_6 bob.med.tb.configs.datasets.hivtb.fold_6_rgb bob.med.tb.configs.datasets.hivtb.fold_7 bob.med.tb.configs.datasets.hivtb.fold_7_rgb bob.med.tb.configs.datasets.hivtb.fold_8 bob.med.tb.configs.datasets.hivtb.fold_8_rgb bob.med.tb.configs.datasets.hivtb.fold_9 bob.med.tb.configs.datasets.hivtb.fold_9_rgb bob.med.tb.configs.datasets.hivtb_RS.fold_0 bob.med.tb.configs.datasets.hivtb_RS.fold_1 bob.med.tb.configs.datasets.hivtb_RS.fold_2 bob.med.tb.configs.datasets.hivtb_RS.fold_3 bob.med.tb.configs.datasets.hivtb_RS.fold_4 bob.med.tb.configs.datasets.hivtb_RS.fold_5 bob.med.tb.configs.datasets.hivtb_RS.fold_6 bob.med.tb.configs.datasets.hivtb_RS.fold_7 bob.med.tb.configs.datasets.hivtb_RS.fold_8 bob.med.tb.configs.datasets.hivtb_RS.fold_9 bob.med.tb.configs.datasets.indian.default bob.med.tb.configs.datasets.indian.fold_0 bob.med.tb.configs.datasets.indian.fold_0_rgb bob.med.tb.configs.datasets.indian.fold_1 bob.med.tb.configs.datasets.indian.fold_1_rgb bob.med.tb.configs.datasets.indian.fold_2 bob.med.tb.configs.datasets.indian.fold_2_rgb bob.med.tb.configs.datasets.indian.fold_3 bob.med.tb.configs.datasets.indian.fold_3_rgb bob.med.tb.configs.datasets.indian.fold_4 bob.med.tb.configs.datasets.indian.fold_4_rgb bob.med.tb.configs.datasets.indian.fold_5 bob.med.tb.configs.datasets.indian.fold_5_rgb bob.med.tb.configs.datasets.indian.fold_6 bob.med.tb.configs.datasets.indian.fold_6_rgb bob.med.tb.configs.datasets.indian.fold_7 bob.med.tb.configs.datasets.indian.fold_7_rgb bob.med.tb.configs.datasets.indian.fold_8 bob.med.tb.configs.datasets.indian.fold_8_rgb bob.med.tb.configs.datasets.indian.fold_9 bob.med.tb.configs.datasets.indian.fold_9_rgb bob.med.tb.configs.datasets.indian.rgb bob.med.tb.configs.datasets.indian_RS.default bob.med.tb.configs.datasets.indian_RS.fold_0 bob.med.tb.configs.datasets.indian_RS.fold_1 bob.med.tb.configs.datasets.indian_RS.fold_2 bob.med.tb.configs.datasets.indian_RS.fold_3 bob.med.tb.configs.datasets.indian_RS.fold_4 bob.med.tb.configs.datasets.indian_RS.fold_5 bob.med.tb.configs.datasets.indian_RS.fold_6 bob.med.tb.configs.datasets.indian_RS.fold_7 bob.med.tb.configs.datasets.indian_RS.fold_8 bob.med.tb.configs.datasets.indian_RS.fold_9 bob.med.tb.configs.datasets.mc_ch.default bob.med.tb.configs.datasets.mc_ch.fold_0 bob.med.tb.configs.datasets.mc_ch.fold_0_rgb bob.med.tb.configs.datasets.mc_ch.fold_1 bob.med.tb.configs.datasets.mc_ch.fold_1_rgb bob.med.tb.configs.datasets.mc_ch.fold_2 bob.med.tb.configs.datasets.mc_ch.fold_2_rgb bob.med.tb.configs.datasets.mc_ch.fold_3 bob.med.tb.configs.datasets.mc_ch.fold_3_rgb bob.med.tb.configs.datasets.mc_ch.fold_4 bob.med.tb.configs.datasets.mc_ch.fold_4_rgb bob.med.tb.configs.datasets.mc_ch.fold_5 bob.med.tb.configs.datasets.mc_ch.fold_5_rgb bob.med.tb.configs.datasets.mc_ch.fold_6 bob.med.tb.configs.datasets.mc_ch.fold_6_rgb bob.med.tb.configs.datasets.mc_ch.fold_7 bob.med.tb.configs.datasets.mc_ch.fold_7_rgb bob.med.tb.configs.datasets.mc_ch.fold_8 bob.med.tb.configs.datasets.mc_ch.fold_8_rgb bob.med.tb.configs.datasets.mc_ch.fold_9 bob.med.tb.configs.datasets.mc_ch.fold_9_rgb bob.med.tb.configs.datasets.mc_ch.rgb bob.med.tb.configs.datasets.mc_ch_RS.default bob.med.tb.configs.datasets.mc_ch_RS.fold_0 bob.med.tb.configs.datasets.mc_ch_RS.fold_1 bob.med.tb.configs.datasets.mc_ch_RS.fold_2 bob.med.tb.configs.datasets.mc_ch_RS.fold_3 bob.med.tb.configs.datasets.mc_ch_RS.fold_4 bob.med.tb.configs.datasets.mc_ch_RS.fold_5 bob.med.tb.configs.datasets.mc_ch_RS.fold_6 bob.med.tb.configs.datasets.mc_ch_RS.fold_7 bob.med.tb.configs.datasets.mc_ch_RS.fold_8 bob.med.tb.configs.datasets.mc_ch_RS.fold_9 bob.med.tb.configs.datasets.mc_ch_in.default bob.med.tb.configs.datasets.mc_ch_in.fold_0 bob.med.tb.configs.datasets.mc_ch_in.fold_0_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_1 bob.med.tb.configs.datasets.mc_ch_in.fold_1_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_2 bob.med.tb.configs.datasets.mc_ch_in.fold_2_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_3 bob.med.tb.configs.datasets.mc_ch_in.fold_3_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_4 bob.med.tb.configs.datasets.mc_ch_in.fold_4_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_5 bob.med.tb.configs.datasets.mc_ch_in.fold_5_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_6 bob.med.tb.configs.datasets.mc_ch_in.fold_6_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_7 bob.med.tb.configs.datasets.mc_ch_in.fold_7_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_8 bob.med.tb.configs.datasets.mc_ch_in.fold_8_rgb bob.med.tb.configs.datasets.mc_ch_in.fold_9 bob.med.tb.configs.datasets.mc_ch_in.fold_9_rgb bob.med.tb.configs.datasets.mc_ch_in.rgb bob.med.tb.configs.datasets.mc_ch_in_RS.default bob.med.tb.configs.datasets.mc_ch_in_RS.fold_0 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_1 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_2 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_3 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_4 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_5 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_6 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_7 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_8 bob.med.tb.configs.datasets.mc_ch_in_RS.fold_9 bob.med.tb.configs.datasets.mc_ch_in_pc.default bob.med.tb.configs.datasets.mc_ch_in_pc.rgb bob.med.tb.configs.datasets.mc_ch_in_pc_RS.default bob.med.tb.configs.datasets.montgomery.default bob.med.tb.configs.datasets.montgomery.fold_0 bob.med.tb.configs.datasets.montgomery.fold_0_rgb bob.med.tb.configs.datasets.montgomery.fold_1 bob.med.tb.configs.datasets.montgomery.fold_1_rgb bob.med.tb.configs.datasets.montgomery.fold_2 bob.med.tb.configs.datasets.montgomery.fold_2_rgb bob.med.tb.configs.datasets.montgomery.fold_3 bob.med.tb.configs.datasets.montgomery.fold_3_rgb bob.med.tb.configs.datasets.montgomery.fold_4 bob.med.tb.configs.datasets.montgomery.fold_4_rgb bob.med.tb.configs.datasets.montgomery.fold_5 bob.med.tb.configs.datasets.montgomery.fold_5_rgb bob.med.tb.configs.datasets.montgomery.fold_6 bob.med.tb.configs.datasets.montgomery.fold_6_rgb bob.med.tb.configs.datasets.montgomery.fold_7 bob.med.tb.configs.datasets.montgomery.fold_7_rgb bob.med.tb.configs.datasets.montgomery.fold_8 bob.med.tb.configs.datasets.montgomery.fold_8_rgb bob.med.tb.configs.datasets.montgomery.fold_9 bob.med.tb.configs.datasets.montgomery.fold_9_rgb bob.med.tb.configs.datasets.montgomery.rgb bob.med.tb.configs.datasets.montgomery_RS.default bob.med.tb.configs.datasets.montgomery_RS.fold_0 bob.med.tb.configs.datasets.montgomery_RS.fold_1 bob.med.tb.configs.datasets.montgomery_RS.fold_2 bob.med.tb.configs.datasets.montgomery_RS.fold_3 bob.med.tb.configs.datasets.montgomery_RS.fold_4 bob.med.tb.configs.datasets.montgomery_RS.fold_5 bob.med.tb.configs.datasets.montgomery_RS.fold_6 bob.med.tb.configs.datasets.montgomery_RS.fold_7 bob.med.tb.configs.datasets.montgomery_RS.fold_8 bob.med.tb.configs.datasets.montgomery_RS.fold_9 bob.med.tb.configs.datasets.nih_cxr14_re.cardiomegaly_idiap bob.med.tb.configs.datasets.nih_cxr14_re.default bob.med.tb.configs.datasets.nih_cxr14_re.idiap bob.med.tb.configs.datasets.nih_cxr14_re_pc.idiap bob.med.tb.configs.datasets.padchest.cardiomegaly_idiap bob.med.tb.configs.datasets.padchest.idiap bob.med.tb.configs.datasets.padchest.no_tb_idiap bob.med.tb.configs.datasets.padchest.tb_idiap bob.med.tb.configs.datasets.padchest.tb_idiap_rgb bob.med.tb.configs.datasets.padchest_RS.tb_idiap bob.med.tb.configs.datasets.shenzhen.default bob.med.tb.configs.datasets.shenzhen.fold_0 bob.med.tb.configs.datasets.shenzhen.fold_0_rgb bob.med.tb.configs.datasets.shenzhen.fold_1 bob.med.tb.configs.datasets.shenzhen.fold_1_rgb bob.med.tb.configs.datasets.shenzhen.fold_2 bob.med.tb.configs.datasets.shenzhen.fold_2_rgb bob.med.tb.configs.datasets.shenzhen.fold_3 bob.med.tb.configs.datasets.shenzhen.fold_3_rgb bob.med.tb.configs.datasets.shenzhen.fold_4 bob.med.tb.configs.datasets.shenzhen.fold_4_rgb bob.med.tb.configs.datasets.shenzhen.fold_5 bob.med.tb.configs.datasets.shenzhen.fold_5_rgb bob.med.tb.configs.datasets.shenzhen.fold_6 bob.med.tb.configs.datasets.shenzhen.fold_6_rgb bob.med.tb.configs.datasets.shenzhen.fold_7 bob.med.tb.configs.datasets.shenzhen.fold_7_rgb bob.med.tb.configs.datasets.shenzhen.fold_8 bob.med.tb.configs.datasets.shenzhen.fold_8_rgb bob.med.tb.configs.datasets.shenzhen.fold_9 bob.med.tb.configs.datasets.shenzhen.fold_9_rgb bob.med.tb.configs.datasets.shenzhen.rgb bob.med.tb.configs.datasets.shenzhen_RS.default bob.med.tb.configs.datasets.shenzhen_RS.fold_0 bob.med.tb.configs.datasets.shenzhen_RS.fold_1 bob.med.tb.configs.datasets.shenzhen_RS.fold_2 bob.med.tb.configs.datasets.shenzhen_RS.fold_3 bob.med.tb.configs.datasets.shenzhen_RS.fold_4 bob.med.tb.configs.datasets.shenzhen_RS.fold_5 bob.med.tb.configs.datasets.shenzhen_RS.fold_6 bob.med.tb.configs.datasets.shenzhen_RS.fold_7 bob.med.tb.configs.datasets.shenzhen_RS.fold_8 bob.med.tb.configs.datasets.shenzhen_RS.fold_9 bob.med.tb.configs.datasets.tbpoc.fold_0 bob.med.tb.configs.datasets.tbpoc.fold_0_rgb bob.med.tb.configs.datasets.tbpoc.fold_1 bob.med.tb.configs.datasets.tbpoc.fold_1_rgb bob.med.tb.configs.datasets.tbpoc.fold_2 bob.med.tb.configs.datasets.tbpoc.fold_2_rgb bob.med.tb.configs.datasets.tbpoc.fold_3 bob.med.tb.configs.datasets.tbpoc.fold_3_rgb bob.med.tb.configs.datasets.tbpoc.fold_4 bob.med.tb.configs.datasets.tbpoc.fold_4_rgb bob.med.tb.configs.datasets.tbpoc.fold_5 bob.med.tb.configs.datasets.tbpoc.fold_5_rgb bob.med.tb.configs.datasets.tbpoc.fold_6 bob.med.tb.configs.datasets.tbpoc.fold_6_rgb bob.med.tb.configs.datasets.tbpoc.fold_7 bob.med.tb.configs.datasets.tbpoc.fold_7_rgb bob.med.tb.configs.datasets.tbpoc.fold_8 bob.med.tb.configs.datasets.tbpoc.fold_8_rgb bob.med.tb.configs.datasets.tbpoc.fold_9 bob.med.tb.configs.datasets.tbpoc.fold_9_rgb bob.med.tb.configs.datasets.tbpoc_RS.fold_0 bob.med.tb.configs.datasets.tbpoc_RS.fold_1 bob.med.tb.configs.datasets.tbpoc_RS.fold_2 bob.med.tb.configs.datasets.tbpoc_RS.fold_3 bob.med.tb.configs.datasets.tbpoc_RS.fold_4 bob.med.tb.configs.datasets.tbpoc_RS.fold_5 bob.med.tb.configs.datasets.tbpoc_RS.fold_6 bob.med.tb.configs.datasets.tbpoc_RS.fold_7 bob.med.tb.configs.datasets.tbpoc_RS.fold_8 bob.med.tb.configs.datasets.tbpoc_RS.fold_9 .. include:: links.rst