| src/mednet/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/datamodule.py |
31 |
5 |
0 |
84% |
| src/mednet/config/data/hivtb/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/hivtb/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/indian/datamodule.py |
14 |
0 |
0 |
100% |
| src/mednet/config/data/indian/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/indian/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/datamodule.py |
31 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/datamodule.py |
14 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/datamodule.py |
19 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_padchest/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_padchest/datamodule.py |
23 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_padchest/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/datamodule.py |
23 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v1_healthy_vs_atb.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/montgomery_shenzhen_indian_tbx11k/v2_others_vs_atb.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14/cardiomegaly.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14/datamodule.py |
39 |
8 |
0 |
79% |
| src/mednet/config/data/nih_cxr14/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14_padchest/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14_padchest/datamodule.py |
14 |
0 |
0 |
100% |
| src/mednet/config/data/nih_cxr14_padchest/idiap.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/padchest/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/padchest/cardiomegaly_idiap.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/padchest/datamodule.py |
33 |
6 |
0 |
82% |
| src/mednet/config/data/padchest/idiap.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/padchest/no_tb_idiap.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/padchest/tb_idiap.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/alltest.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/datamodule.py |
31 |
1 |
0 |
97% |
| src/mednet/config/data/shenzhen/default.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/shenzhen/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/datamodule.py |
30 |
5 |
0 |
83% |
| src/mednet/config/data/tbpoc/fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbpoc/fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/datamodule.py |
70 |
1 |
0 |
99% |
| src/mednet/config/data/tbx11k/v1_fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v1_healthy_vs_atb.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_0.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_1.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_2.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_3.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_4.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_5.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_6.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_7.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_8.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_fold_9.py |
3 |
0 |
0 |
100% |
| src/mednet/config/data/tbx11k/v2_others_vs_atb.py |
3 |
0 |
0 |
100% |
| src/mednet/config/models/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/config/models/alexnet.py |
6 |
0 |
0 |
100% |
| src/mednet/config/models/alexnet_pretrained.py |
6 |
0 |
0 |
100% |
| src/mednet/config/models/densenet.py |
6 |
0 |
0 |
100% |
| src/mednet/config/models/densenet_pretrained.py |
6 |
0 |
0 |
100% |
| src/mednet/config/models/densenet_rs.py |
6 |
6 |
0 |
0% |
| src/mednet/config/models/logistic_regression.py |
3 |
0 |
0 |
100% |
| src/mednet/config/models/mlp.py |
3 |
0 |
0 |
100% |
| src/mednet/config/models/pasa.py |
6 |
0 |
0 |
100% |
| src/mednet/data/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/data/augmentations.py |
59 |
7 |
0 |
88% |
| src/mednet/data/datamodule.py |
211 |
47 |
0 |
78% |
| src/mednet/data/image_utils.py |
15 |
7 |
0 |
53% |
| src/mednet/data/split.py |
69 |
19 |
0 |
72% |
| src/mednet/data/typing.py |
25 |
3 |
0 |
88% |
| src/mednet/engine/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/engine/callbacks.py |
68 |
3 |
0 |
96% |
| src/mednet/engine/device.py |
51 |
21 |
0 |
59% |
| src/mednet/engine/evaluator.py |
187 |
12 |
0 |
94% |
| src/mednet/engine/loggers.py |
10 |
0 |
0 |
100% |
| src/mednet/engine/predictor.py |
32 |
11 |
0 |
66% |
| src/mednet/engine/saliency/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/engine/saliency/completeness.py |
77 |
77 |
0 |
0% |
| src/mednet/engine/saliency/evaluator.py |
59 |
59 |
0 |
0% |
| src/mednet/engine/saliency/generator.py |
79 |
38 |
0 |
52% |
| src/mednet/engine/saliency/interpretability.py |
97 |
36 |
0 |
63% |
| src/mednet/engine/saliency/viewer.py |
50 |
5 |
0 |
90% |
| src/mednet/engine/trainer.py |
25 |
0 |
0 |
100% |
| src/mednet/models/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/models/alexnet.py |
69 |
28 |
0 |
59% |
| src/mednet/models/densenet.py |
68 |
28 |
0 |
59% |
| src/mednet/models/logistic_regression.py |
42 |
23 |
0 |
45% |
| src/mednet/models/loss_weights.py |
17 |
17 |
0 |
0% |
| src/mednet/models/mlp.py |
43 |
23 |
0 |
47% |
| src/mednet/models/normalizer.py |
24 |
1 |
0 |
96% |
| src/mednet/models/pasa.py |
114 |
0 |
0 |
100% |
| src/mednet/models/separate.py |
10 |
0 |
0 |
100% |
| src/mednet/models/transforms.py |
46 |
6 |
0 |
87% |
| src/mednet/models/typing.py |
14 |
0 |
0 |
100% |
| src/mednet/scripts/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/scripts/cli.py |
22 |
2 |
0 |
91% |
| src/mednet/scripts/click.py |
8 |
0 |
0 |
100% |
| src/mednet/scripts/config.py |
77 |
19 |
0 |
75% |
| src/mednet/scripts/database.py |
69 |
7 |
0 |
90% |
| src/mednet/scripts/evaluate.py |
62 |
4 |
0 |
94% |
| src/mednet/scripts/experiment.py |
61 |
0 |
0 |
100% |
| src/mednet/scripts/predict.py |
48 |
3 |
0 |
94% |
| src/mednet/scripts/saliency/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/scripts/saliency/completeness.py |
45 |
23 |
0 |
49% |
| src/mednet/scripts/saliency/evaluate.py |
33 |
19 |
0 |
42% |
| src/mednet/scripts/saliency/generate.py |
38 |
0 |
0 |
100% |
| src/mednet/scripts/saliency/interpretability.py |
23 |
9 |
0 |
61% |
| src/mednet/scripts/saliency/view.py |
25 |
0 |
0 |
100% |
| src/mednet/scripts/train.py |
74 |
4 |
0 |
95% |
| src/mednet/scripts/train_analysis.py |
51 |
0 |
0 |
100% |
| src/mednet/scripts/utils.py |
65 |
15 |
0 |
77% |
| src/mednet/utils/__init__.py |
0 |
0 |
0 |
100% |
| src/mednet/utils/checkpointer.py |
32 |
5 |
0 |
84% |
| src/mednet/utils/rc.py |
3 |
0 |
0 |
100% |
| src/mednet/utils/resources.py |
202 |
51 |
0 |
75% |
| src/mednet/utils/tensorboard.py |
16 |
0 |
0 |
100% |